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The ISME Journal (2016) 10, 19541966 2016 International Society for Microbial Ecology All rights reserved 1751-7362/16
http://www.nature.com/ismej
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ORIGINAL ARTICLE
Peat: home to novel syntrophic species that feed acetate- and hydrogen-scavenging methanogens
Oliver Schmidt, Linda Hink, Marcus A Horn and Harold L Drake
Department of Ecological Microbiology, University of Bayreuth, Bayreuth, Germany
Syntrophic bacteria drive the anaerobic degradation of certain fermentation products (e.g., butyrate, ethanol, propionate) to intermediary substrates (e.g., H2, formate, acetate) that yield methane at the ecosystem level. However, little is known about the in situ activities and identities of these syntrophs in peatlands, ecosystems that produce significant quantities of methane. The consumption of butyrate, ethanol or propionate by anoxic peat slurries at 5 and 15 C yielded methane and CO2 as the sole accumulating products, indicating that the intermediates H2, formate and acetate were scavenged effectively by syntrophic methanogenic consortia. 16S rRNA stable isotope probing identified novel species/strains of Pelobacter and Syntrophomonas that syntrophically oxidized ethanol and butyrate, respectively. Propionate was syntrophically oxidized by novel species of Syntrophobacter and Smithella, genera that use different propionate-oxidizing pathways. Taxa not known for a syntrophic metabolism may have been involved in the oxidation of butyrate (Telmatospirillum-related) and propionate (unclassified Bacteroidetes and unclassified Fibrobacteres). Gibbs free energies (Gs) for syntrophic oxidations of ethanol and butyrate were more favorable than Gs for syntrophic oxidation of propionate. As a result of the thermodynamic constraints, acetate transiently accumulated in ethanol and butyrate treatments but not in propionate treatments. Aceticlastic methanogens (Methanosarcina, Methanosaeta) appeared to outnumber hydrogenotrophic methanogens (Methanocella, Methanoregula), reinforcing the likely importance of aceticlastic methanogenesis to the overall production of methane. Gs for acetogenesis from H2 to
CO2 approximated to 20 kJ mol1 when acetate concentrations were low, indicating that acetogens may have contributed to the flow of carbon and reductant towards methane.
The ISME Journal (2016) 10, 19541966; doi:http://dx.doi.org/10.1038/ismej.2015.256
Web End =10.1038/ismej.2015.256 ; published online 15 January 2016
Introduction
Plant-derived organic polymers (e.g., cellulose) are mineralized to carbon dioxide (CO2) by fungi and bacteria under oxic conditions (Westermann, 1993). However, a complex network of interwoven degradation processes that are catalyzed by different metabolic guilds of microbes is required to completely mineralize plant-derived organic polymers in anoxic habitats (e.g., water-saturated peat) when CO2 is the main...