Melatonin: A Small Molecule but Important for Salt Stress Tolerance in Plants

Abstract

In response to salt stress, plants have evolved a complex antioxidant enzyme system, including superoxide dismutase (SOD), guaiacol peroxidase (POD), catalase (CAT), glutathione peroxidases (GPX), glutathione S-transferase (GST), dehydroascorbate reductase (DHAR), glutathione reductase (GR), and ascorbate peroxidase (APX) [17]. Under salt stress, exogenous melatonin application also significantly increased the activities of APX, CAT, SOD, POD, GR, and GPX in melatonin-treated seedlings compared to their non-treated counterparts [31,33]. [...]melatonin interacts with ROS by improving concentrations of antioxidants (AsA-GSH) [17]. In salt-stressed plants, Na+ can enter into plant cells, which at high concentrations is harmful to cytosolic enzymes [55]. [...]regulation of K+ and Na+ concentrations to maintain high of K+ and low Na+ cytosolic levels has a significant impact on salt-stressed plants [54,55]. Similar to AtNHX1, AtSOS1 was also upregulated by salt stress [56]. Besides Na+/H+ antiporters, the involvement of K+ channels has also been reported in plants’ salt stress response.

1. Introduction

Salinity represents an environmental stress factor affecting plant growth and development, and a destructive threat to global agricultural production [1], which damages more than 400 million hectares of land—over 6% of the world’s total land area. Of the irrigated farmland areas, currently 19.5% are salt-affected, with increasing numbers facing the threat of salinization (http://www.plantstress.com/Articles/index.asp). The effects of salt stress on plants mainly include osmotic stress, specific ion toxicity, nutritional imbalance, and reactive oxygen species [2]. Osmotic stress is a rapid process caused by salt concentrations around the roots, which is induced at the initial stage of salt stress [1,2,3]. Na⁺ accumulation at a later stage causes nutrient imbalance, leading to specific ion toxicity [4]. Plants’ exposure to salt stress induces overproduction of reactive oxygen species (ROS), which results in membrane injury [5,6].

Melatonin is a multi-regulatory molecule likely to be present in most plants and animals [7]. It was first identified in 1958, in the bovine pineal gland [8], and is a well-known animal hormone regulating various biological processes, such as the circadian rhythm [9,10], antioxidant activity [11], immunological enhancement [12], seasonal reproduction [13], emotional status, and physical conditions [14]. In 1995, melatonin was discovered in vascular plants [15,16], which initiated this field of study. Melatonin was found to have many physiological functions similar to indole-3-acetic acid (IAA), such as regulating plant photoperiod and protecting chlorophyll [17]. More importantly, it acts as a powerful antioxidant, thus protecting plants from various biotic/abiotic stresses [18,19].

In recent years, more functions of melatonin have been identified in higher plants, mainly its roles as a stress responses regulator. In this review, we systematically discuss the functional and potential regulatory mechanisms of melatonin in response to salt stress. We also focus on the putative genes involved in the melatonin-induced salt stress resistance. Furthermore, we summarized plant melatonin receptors, thus outlining the current situation and further directions for promoting the study of plant salt stress tolerance.

2. Function and Mechanism of Melatonin Effects on Plant Salt Tolerance

Extensive studies have revealed the crucial and indispensable roles that melatonin plays in increasing salt tolerance in diverse plant species (Table 1). These functions regulate antioxidant systems to protect plants from the salt stress-induced water deficits and physiological damages, improve photosynthetic efficiency and ion homeostasis, and behave as an activator mediating NO signaling and the polyamine metabolism pathway [7,17,33].

2.1. Melatonin Activates Antioxidant Systems in Response to Salt Stress

Salinity induces reactive oxygen species (ROS) production, including superoxide anion (O₂⁻), hydrogen peroxide (H₂O₂), hydroxyl radical (OH⁻), and singlet oxygen (¹O₂) [47]. Excess ROS usually leads to cell damage and oxidative stress [22]; it also acts as signaling molecules fundamentally involved in mediating salt tolerance [48]. Plants have developed two antioxidant systems to alleviate ROS-triggered damages: the enzymatic and non-enzymatic systems [49]. In response to salt stress, plants have evolved a complex antioxidant enzyme system, including superoxide dismutase (SOD), guaiacol peroxidase (POD), catalase (CAT), glutathione peroxidases (GPX), glutathione S-transferase (GST), dehydroascorbate reductase (DHAR), glutathione reductase (GR), and ascorbate peroxidase (APX) [17]. The non-enzymatic system, including ascorbic acid (AsA), α-tocopherols, glutathione (GSH), carotenoids, and phenolic compounds, is also essential for ROS elimination [50].

Exogenous melatonin treatment significantly reduced salinity-induced ROS. Following 12 days of salt stress, H₂O₂ concentration increased by 37.5%, while melatonin pre-treatment of cucumber maintained a low H₂O₂ concentration throughout the experiment [17]. Similar results were also observed in salt-stressed rapeseed seedlings, and the application of exogenous melatonin decreased H₂O₂ content by 11.2% [36]. Liang et al. [38] discovered inhibitory effects of melatonin resulting in an increased rate of H₂O₂ production in rice seedlings under salt stress, showing that melatonin works in a concentration-dependent manner. Melatonin scavenges ROS, mainly triggered by salt stress, via three pathways. Melatonin acts as a broad-spectrum antioxidant that interacts with ROS and directly scavenges it [51]. The primary function of melatonin is to act as a free radical scavenger and an antioxidant. Through the free radical scavenging cascade, a single melatonin molecule can scavenge up to 10 reactive oxygen species (ROS)/reactive nitrogen species (RNS), which differs from other conventional antioxidants [51]. Exogenous melatonin decreases H₂O₂ and O₂⁻ concentrations by activating antioxidant enzymes. This function has been confirmed in many plant species, such as rapeseed, radish, cucumber, rice, maize, bermudagrass, soybean, watermelon, kiwifruit, and Malus hupehensis [36]. In cucumber, the activity of major protective antioxidant enzymes—including SOD, CAT, POD, and APX—in melatonin pre-treated plants was significantly higher than control plants [17]. Under salt stress, exogenous melatonin application also significantly increased the activities of APX, CAT, SOD, POD, GR, and GPX in melatonin-treated seedlings compared to their non-treated counterparts [31,33]. Moreover, melatonin interacts with ROS by improving concentrations of antioxidants (AsA-GSH) [17]. In cucumber, AsA and GSH concentrations in melatonin pre-treated plants were 1.7- and 1.3-fold higher, respectively, compared to control plants [17]. Other studies have reported a marked melatonin-dependent induction of AsA and GSH in maize seedlings under salt stress [31]. These findings suggest that exogenous melatonin could activate enzymatic and non-enzymatic antioxidants to scavenge salt stress-induced ROS, thus improving salt stress tolerance in plants.

2.2. Melatonin Improves Plant Photosynthesis under Salt Stress

Photosynthesis, an important physio-chemical process responsible for energy production in higher plants, can be indirectly affected by salt stress [46,52]. For many plant species suffering salt stress, decline in productivity is often associated with lower photosynthesis levels [52]. There are two possible reasons for the salt-induced photosynthesis decline: stomatal closure and affected photosynthetic apparatus [52]. Salt stress can cause stomatal closure, and stomatal conductance (Gs) is one of the parameters for evaluating photosynthesis [52]. The parameters of chlorophyll fluorescence include maximum photochemical efficiency of PSII (Fv/Fm), photochemical quenching (qP), non-photochemical quenching [Y(NPQ)], and actual photochemical efficiency of PSII [Y(II), etc. [46].

In addition to its broad-spectrum antioxidant effects, melatonin participates in the regulation of plant photosynthesis under salt stress. Pretreatment with various concentrations (50–500 μM) of melatonin clearly improved salt tolerance in watermelons, where the leaf net photosynthetic rate (Pn), Gs, chlorophyll content, Y(II) and qP were significantly decreased under salt stress. However, this decrease was alleviated by melatonin pretreatment. Melatonin can also protect watermelon photosynthesis by alleviating stomatal limitation [46]. Similar results were observed in salt-stressed cucumber seedlings, where the photosynthetic capacity of cucumber was significantly improved by exogenous melatonin at 50–150 μM concentrations. Photosynthesis improvement is manifested by increased P_N, maximum quantum efficiency of PSII, and total chlorophyll content [17]. In radish seedling, chlorophyll a, chlorophyll b and total chlorophyll contents increased upon melatonin treatment under salt stress, and the 100 μM dose was the best [34]. Melatonin also enhanced rice seedlings’ salt tolerance by decreasing chlorophyll’s degradation rate [38]. Even though the chlorophyll content in melatonin-treated maize seedlings did not change, an obvious increase in Pn was observed under salt stress [33]. Exogenous melatonin’s protective roles in photosynthesis were also observed in soybean, apple, and tomato [21,40,44]. Overall, exogenous melatonin improves photosynthesis by effectively alleviating chlorophyll degradation and stomatal closure caused by salt stress, therefore enhancing salt stress tolerance.

2.3. Melatonin Promotes Ion Homeostasis under Salt Stress

Ion homeostasis refers to the ability of living organisms to maintain stable ion concentrations in a defined space [53]. Na⁺, K⁺, Ca²⁺, and H⁺ are major intracellular ions [53,54]. In salt-stressed plants, Na⁺ can enter into plant cells, which at high concentrations is harmful to cytosolic enzymes [55]. Therefore, regulation of K⁺ and Na⁺ concentrations to maintain high of K⁺ and low Na⁺ cytosolic levels has a significant impact on salt-stressed plants [54,55]. Restriction of Na⁺ influx, active Na⁺ efflux, and compartmentalization of Na⁺ into the vacuole are three major mechanisms of preventing Na⁺ accumulation in the cytoplasm [56]. The NHX1 gene encodes a vacuolar Na⁺/H⁺ exchanger, whose homologue in Arabidopsis, AtNHX1, was upregulated by salt stress resulting in excess transfer of Na⁺ into vacuolar [57]. Salt Overly Sensitive1 (SOS1) encodes a transmembrane protein, identified as a plasma membrane Na⁺/H⁺ antiporter. SOS signaling is responsible for transporting Na⁺ out of the cells [37,56]. The Arabidopsis SOS1 gene possesses 12 transmembrane domains. Similar to AtNHX1, AtSOS1 was also upregulated by salt stress [56]. Besides Na⁺/H⁺ antiporters, the involvement of K⁺ channels has also been reported in plants’ salt stress response. The AKT1 gene encoding a Shaker type K⁺ channel protein is responsible for absorbing K⁺ from the soil and transporting it into the roots [58]. Under salt stress, NHX1, SOS1 and AKT1 upregulated gene expression leads to an increase of K⁺ and decreased Na⁺ in plant cells, thereby improving plants’ salt stress tolerance.

Recently, studies have shown that the exogenous application of melatonin improves plants’ ion homeostasis under salt stress. Melatonin significantly increased K⁺ and decreased Na⁺ contents in shoots of maize seedlings, leading to a significantly higher K⁺/Na⁺ ratio in shoots under melatonin-mediated salinity [33]. Improved ion homeostasis may be related to the upregulation of several genes, such as NHX, SOS and AKT. Under salt stress, MdNHX1 and MdAKT1 transcript levels were greatly upregulated by melatonin, which is consistent with the relatively high K⁺ levels and K⁺/Na⁺ ratio in melatonin pretreated Malus hupehensis seedlings [21]. Similarly, NHX1 and SOS2 expression was higher in melatonin-treated rapeseed seedlings compared to non-treated plants, which correlated with the lower Na⁺/K⁺ ratio [37]. Ca²⁺ signaling plays critical roles in plant biotic and abiotic stress responses; however, no evidence regarding the involvement of Ca²⁺ signaling in melatonin-triggered salinity tolerance exists.

2.4. Melatonin Regulates Plant Hormones Metabolism

Plant hormones are important signals for plant growth and development [30]. Melatonin widely participates in the metabolism of most plant hormones, such as indole-3-acetic acid (IAA), abscisic acid (ABA), gibberellic acids (GA), cytokinins (CK), and ethylene [59].

The melatonin molecule shares chemical similarities with IAA, both using tryptophan as a substrate in their biosynthesis pathways [60]. It is reported that melatonin acts as a growth regulator and exhibits auxin-like activities [61]. Melatonin promotes vegetative growth and root development in many plant species, such as wheat, barley, rice, Arabidopsis, soybean, maize, tomato, etc. [59]. Under stress conditions, the growth-promoting effects of melatonin are higher compared to those in control plants [59]. Melatonin has been proposed to regulate lateral root formation through an IAA-independent pathway in Arabidopsis [61]. In contrast, others suggest a certain relationship between melatonin and IAA; for example, a slight increase in endogenous IAA content was observed in Brassica juncea [59,62] when treated with exogenous melatonin. Furthermore, application of low concentrations of IAA increases endogenous melatonin levels. At the same time, high concentrations of melatonin inhibit PIN1,3,7 expression and decrease IAA levels in Arabidopsis roots, suggesting that melatonin may regulate root growth in Arabidopsis, completely or partially, through auxin synthesis and polar auxin transport [60].

Abscisis acid (ABA) and gibberellic acids (GA) are important plant hormones in stress responses. The dynamic balance of endogenous ABA and GA levels is crucial for seed germination [30,63]. Genes related to ABA synthesis—such as ZEP and NCED1—were upregulated during abiotic stresses, resulting in increased endogenous ABA levels [64]. GA acts as an ABA antagonist [65], and plays essential roles in plant stress tolerance [66]. Studies show that melatonin mediates ABA biosynthesis and metabolism regulation, thus decreasing ABA content under stress conditions. For example, in two drought-stressed Malus species, melatonin selectively downregulates MdNCED3, a key ABA biosynthesis gene, and upregulates MdCYP707A1 and MdCYP707A2, ABA catabolic genes [67]. Similarly, in perennial ryegrass, exogenous melatonin downregulates ABA biosynthesis genes under heat stress, thereby decreasing ABA content [64]. However, melatonin treatment has no effect on water stress-induced ABA accumulation in maize [68]. Under salt stress, melatonin increased endogenous ABA content in Elymus nutans, which was significantly suppressed by fluridone. ABA and fluridone pretreatments had no effect on endogenous melatonin concentration, indicating that ABA might act as a downstream signal that participates in the melatonin-induced cold tolerance. Interestingly, melatonin can also activate the expression of cold-responsive genes to improve plant cold-stress tolerance in an ABA-independent manner. This suggests that both ABA-dependent and ABA-independent pathways might be involved in melatonin-induced cold tolerance [69]. These data suggest that, similar to the heat-related results, under drought and cold stresses, exogenous melatonin can also alleviate salt stress by regulating ABA biosynthesis and catabolism. Under salt stress, CsNCED1 and CsNCED2—ABA synthesis-related genes—transcript levels were reduced in melatonin-pretreated seeds, and genes related to ABA catabolism were significantly increased, thus leading to a decreased ABA content. On the contrary, GA20ox and GA3ox—genes involved in GA synthesis—were significantly upregulated by melatonin, which is consistent with the increased GA content [30]. Overall, hormone biosynthesis- and catabolism-related research is helpful for understanding melatonin’s mechanisms in response to salt stress.

2.5. Melatonin Mediates NO Signaling Pathway

Nitric oxide (NO) is an important messenger and ubiquitous signaling molecule, which participates in various plant physiological processes [70], and responds to abiotic and biotic stresses [41,42,71,72]. In animals, NO is synthesized by NO synthase (NOS) [72], and whether NOS-like proteins exist in plants remains controversial. NOS-like proteins were first identified in plants by Ninnemann and Maier [73]. Initially, Arabidopsis nitric oxide associated 1 (NOA1) was characterized as a NOS-like gene with NOS activity. However, further research indicated that these proteins function as a GTPases, involved in binding RNA/ribosomes [74]. There are at least seven different NO biosynthetic pathways found in plants, which can be classified as oxidative or reductive based on the operation [75]. Oxidative routes of NO biosynthesis use l-arginine, polyamine, or droxylamine as substrates [75]. S-nitrosylation refers to the process of covalently binding a NO group to its target proteins via cysteine (Cys) residues, and producing an S-nitrosothiol [76]. S-nitrosylation, with NO, is widely used to explain NO signaling in both animals and plants [77,78].

Studies have shown that melatonin, through its interaction with NO, plays important roles in plant stress responses. For examples, NO acts as a downstream signal for melatonin mitigated sodic alkaline stress in tomato seedlings [79]. In addition, exogenous melatonin significantly induces the accumulation of polyamine-mediated NO in the roots of Arabidopsis under Fe deficiency conditions, and increases the plants’ tolerance to Fe deficiency [80]. Melatonin-induced NO production is also involved in the innate immune response of Arabidopsis against P. syringe pv. tomato (Pst) DC3000 infection [81]. In rapeseed seedlings, the possible roles of NO in melatonin-enhanced salt stress tolerance have been reported. Salt stress firstly induces the increase in melatonin and NO serves as the downstream signal. In addition, both melatonin and sodium nitroprusside (SNP) increased salinity-induced S-nitrosylation. Increased S-nitrosylation could be partially impaired by 2-phenyl-1-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide (PTIO), an NO scavenger. Application of melatonin increased NHX1 and SOS2 transcript levels, which was blocked by NO removal. These data suggest that NO is involved in the maintenance of ion homeostasis in plant salt stress tolerance. NO is also involved in the improvement of the antioxidant systems triggered by melatonin [37]. However, the above research still lacks S-nitrosylation target protein identification. In addition, the interactions between NO and other substances, such as hormones, chlorophyll, polyamines, etc., in melatonin-enhanced salt stress tolerance requires further exploration.

2.6. Melatonin Regulates Polyamine Metabolism

Polyamines (PAs) are small aliphatic polycations that have been found in almost all living organisms. They play important roles in plant growth and development, and responses to various biotic and abiotic stimuli [82,83,84]. Spermidine (Spd), putrescine (Put), and spermine (Spm) are three main polyamines in plants [84]. Both the application of exogenous polyamines and modulating endogenous polyamine contents effectively enhance plant stress tolerance [83,84].

Studies have shown that melatonin plays a key role in polyamine-mediated signaling pathways under various abiotic stresses, such as alkaline stress, cold, oxidative, and iron deficiency tolerance [7]. For example, polyamines mediate the melatonin-induced alkaline stress tolerance of Malus hupehensis. Under alkaline stress, melatonin application significantly upregulated the expression of six polyamine synthesis-related genes, including SAMDC1, -3, -4, and SPDS1, -3, -5, -6. Moreover, melatonin-treated Malus hupehensis exhibited more polyamine accumulation compared to the untreated seedlings [85]. Exogenous melatonin also modulates polyamine and ABA metabolisms of cucumber seedlings during chilling stress. The melatonin-related cold tolerance improvement is consistent with the increased PA content [24]. PA modulation by melatonin under a salt stress response was also described by Ke et al. [7], where they show that melatonin treatment increases PAs content by accelerating the conversion of arginine and methionine to polyamines in wheat seedlings. At the same time, melatonin suppresses PAO (polyamine oxidase) and DAO (diamine oxidase) activities—two enzymes involved in polyamines metabolism—which decrease melatonin-induced polyamine degradation, thus improving salt stress tolerance [7]. This provides initial evidence that exogenous melatonin treatment enhances plant salt tolerance by regulating PAs, whether the proposed mechanisms are applicable to other plant species requires further investigation. In addition, polyamines are involved in the melatonin-induced NO production in the roots of Fe deficient Arabidopsis, and increase the plant tolerance to Fe deficiency [80]. Thus, the interaction between PAs and NO in melatonin-induced salt stress tolerance of plants requires further confirmation.

3. Melatonin Correlated Genes and Gene Families in Plants

To further investigate melatonin’s mechanism in regulating salt tolerance in plants, melatonin biosynthesis- and metabolism-related genes, transcription factors, and other related genes and gene families were summarized.

3.1. Putative Genes Involved in Melatonin-Mediated Salt Stress Tolerance

In a wide range of plant species, the melatonin biosynthesis pathway begins with tryptophan, which is converted to tryptamine by tryptophan decarboxylase. Subsequently, tryptamine is converted to serotonin by tryptamine 5-hydroxylase (T5H). In some of the other plant species, the first two steps of the melatonin biosynthesis pathway are reversed. Tryptophan is first converted into 5-hydroxytrytophan by tryptophan 5-hydroxylase (TPH), and then to serotonin by aromatic-l-amino-acid decarboxylase (TDC/AADC) [86]. Although no TPH enzyme been cloned, the presence of ¹⁴C-5-hydroxytryptophan and ¹⁴C-serotonin have been detected when using ¹⁴C-tryptophan as substrate in Hypericum perforatum [87]. In the following two steps, three distinct enzymes and two inversed routes were involved. Serotonin N-acetyltransferase (SNAT) catalyzes serotonin into N-acetylserotonin, and N-acetylserotonin was then converted into melatonin by N-acetylserotonin methyl-transferase (ASMT) or caffeic acid O-methyltransferase (COMT). As ASMT/COMT exhibits substrate affinity towards serotonin, and SNAT has substrate affinity toward 5-methoxytryptamine, serotonin could have been first methylated to 5-methoxytryptamine by ASMT/COMT and then to melatonin by SNAT. Different steps involved in the melatonin biosynthesis pathways may occur in different subcellular locations d. In total, six enzymes are involved in plant melatonin biosynthesis, which are related to four different routes. In an Arabidopsis AtSNAT mutant, endogenous melatonin content was lower than that in wild-type Arabidopsis seedlings. Moreover, the AtSNAT mutant was salt hypersensitive compared to wild-type [22]. The possible functions of apple MzASMT9 were investigated in Arabidopsis. Under salt stress, MzASMT9 transcript levels were upregulated, and melatonin levels were also increased by the ectopic expression of MzASMT9, thus leading to an enhanced salt tolerance in transgenic Arabidopsis lines [88]. Although there is no direct evidence about the possible roles of TDC, T5H, and COMT in plant salt tolerance, overexpression and suppression of these genes obviously affected endogenous plant melatonin levels [89,90,91,92].

The catabolism of phyto-melatonin has also been reported in recent years. Unlike the biosynthesis of melatonin, the metabolism of phyto-melatonin is either through an enzymatic or non-enzymatic pathway [41]. The major melatonin metabolites in plants are N¹-acetyl-N²-formyl-5-methoxykynuramine (AFMK) and melatonin hydroxylated derivatives, such as 2-hydroxymelatonin and cyclic-3-hydroxymelatonin (3-OHM) [41,93,94].

In rice, melatonin is catabolized into 2-hydroxymelatonin by melatonin 2-hydroxylase (M2H), which belongs to the 2-oxoglutarate-dependent dioxygenase (2-ODD) superfamily [95]. The first M2H gene was cloned from rice in 2015 [96].

Except for genes involved in the biosynthesis and catabolism of phyto-melatonin, transcription factors also play critical roles in the melatonin-mediated salt stress response. Under abiotic stress (salt, drought, and cold), exogenous melatonin significantly improves endogenous melatonin levels and upregulates the expression of C-repeat binding factors (CBFs)/Drought response element Binding 1 factors (DREB1s), thus leading to an increase in transcript levels of multiple stress-responsive genes, including COR15A, RD22, and KIN1 [23]. RNA sequencing was performed in cucumber roots with or without melatonin treatment under salt stress. The results show that many transcription factors including WRKY, MYB, NAC, and the ethylene-responsive transcription factor were differentially expressed in melatonin-treated plants compared to control plants under NaCl-induced stress [97].

The effects of melatonin on the expression of genes involved in ROS scavenging under NaCl stress were investigated. The application of 1 mM melatonin induced the expression of CsCu-ZnSOD, CsFe-ZnSOD, CsPOD, and CsCAT in cucumber under salt stress [30]. Similar results were also observed in rapeseed, and studies showed that antioxidant defense-related genes such as APX, Cu/ZnSOD and MnSOD were involved in melatonin-induced salt stress tolerance [37]. In tomato seedlings under salt stress, melatonin significantly improved TRXf gene expression, which participates in the redox regulation of many physiological processes [44]. Genes responsible for maintaining ion homeostasis were also involved in melatonin-enhanced salt stress. MdNHX1 and MdAKT1, two ion-channel genes, were upregulated by exogenous melatonin in Malus hupehensis under salinity [21]. NHX1 and SOS2 expression was also modulated by melatonin in salt-stressed rapeseed. Several studies have shown that melatonin alleviates salinity stress by regulating hormone biosynthesis and metabolism gene expression. Melatonin induced the expression of GA biosynthesis genes (GA20ox and GA3ox). Meanwhile, the ABA catabolism genes, CsCYP707A1 and CsCYP707A2, were obviously upregulated, whereas the ABA biosynthesis gene CsNECD2 was downregulated by melatonin in salt-stressed cucumber seedlings [30].

3.2. Comparative and Phylogenetic Analysis of TDC, T5H, SNAT, and ASMT Gene Families in Plants

TDC, T5H, SNAT, and ASMT correlate with melatonin biosynthesis in most plant species [86]. Recently, a genome-wide expression, classification, phylogenetic, and expression profiles of the tryptophan decarboxylase (TDC) gene family was conducted in Solanum lycopersicum [98]. A total of five TDC genes were obtained from the tomato genome. Among the five candidate genes, SlTDC3 was expressed in all the tested tissues, whereas SlTDC1 and SlTDC2 were specifically expressed in the fruit and leaves of the tomato plant, respectively. SlTDC4 and SlTDC5 are not expressed in tomato. The study of TDC genes in rice is relatively clearer compared to other plants. Rice has at least three TDC genes [89]. OsTDC1 (AK31) and OsTDC2 (AK53) were first identified by Kang et al. [99]. Heterologous expression of OsTDC1 and OsTDC2 in Escherichia coli showed that both genes exhibited TDC activity [99]. The expression profiles of OsTDC1, OsTDC2, and OsTDC3 have also been investigated in rice. OsTDC1 and OsTDC2 have similar expression profiles, with low expression in seedling shoots, and relatively high levels in leafs, stems, roots and flowers. In comparison, OsTDC3 expression was very low in almost all tested organs, except the roots [89]. These results indicated that different TDC genes might play different roles during plant growth and development. Overexpression of OsTDC1, OsTDC2, and especially OsTDC3 leads to improved melatonin levels in transgenic rice [89]. The phylogenetic relationships and gene structures of TDCs from algae to higher plants showed that they are found throughout the high plant kingdom with a small family size. The evolution of TDC genes in plants was mainly through gene expansion and intron loss events. This is the first research of its kind on the TDC gene family; however, the expression profiles of TDCs were not investigated under the salt stress condition [98,99,100]. The ASMT gene family was also analyzed in Solanum lycopersicum [101]. There are 14 candidate ASMT genes involved in tomato, three of which may be pseudogenes. The expression patterns of SlASMTs suggested that four SlASMTs were involved in tomato plant response to biotic stresses [101].

TDC, T5H, SNAT, and genes have been identified and functionally analyzed in many plants, especially in rice [89,91,102,103,104]. A systematic analysis of the tomato TDC gene family has been conducted, and the phylogenetic relationships between TDC genes in plants have also been analyzed. In addition to the ASMT gene families in tomato, genome-wide analysis of SNAT, ASMT, and T5H families has not been reported. Based on the methods described by Pang et al. [98] and Liu et al. [101], we searched TDC genes in wheat genome, as well as SNAT and ASMT genes in 10 plant species from algae to higher plants. We further validated these TDC and ASMT genes using the previously reported main residues [105,106,107]. Only BLASTP (identity >70%, coverage >70%) was conducted for T5H genes identification, using rice T5H genes as the query. A total of eight T5H, 37 SNAT, and 140 ASMT candidate genes were obtained in 10 plant species (Supplementary Table S1). Furthermore, there are 33 candidate TDC genes in wheat. Phylogenetic relationships of SNAT and ASMT are shown in Figure 1 and Figure 2. Based on the phylogenetic tree topology, the SNAT gene family could be divided into four groups (Group I to IV). SNAT members in Group I are highly conserved across all species. Similar numbers of SNAT genes were found in different species, and no obvious gene expansion was observed. OsSNAT2 of rice belongs to Group I, whose function is already revealed [108]. The ASMT gene family phylogenetic tree is similar to that of the TDC gene family [100]. One member from Volvox carteri clustered into a separate branch, indicating that ASMT genes originated before the divergence of green algae and land plant species. The average gene number of ASMT in algae, pteridophyta, gymnosperms, and angiosperms is 1, 4, 25, and 18.3, respectively, suggesting that gene expansion occurred during the evolution from algae to higher plants.

Furthermore, we specially investigated the expression profiles of TDC, T5H, SNAT, and ASMT genes in wheat under salt stress. RNA-sequencing data were downloaded from the NCBI Sequence Read Archive (SRA) ddabase (https://www.ncbi.nlm.nih.gov/sra/). FPKM (fragments per kilobase of transcript per million fragments mapped) values for all candidate genes in wheat were calculated using Hisat2 and Stringtie, and the heat maps were generated using the geom_tile method in ggplot2 [109]. As shown in Figure 3, there are four TDC genes, two T5H genes, one SNAT gene, and 10 ASMT genes specifically expressed under salt stress, and lots of genes are upregulated under salt conditions, indicating that these genes could be involved in the salt stress tolerance of wheat.

4. Phyto-Melatonin Receptor

It is clear that exogenous melatonin plays a considerable role during plant growth and development, and is associated with plant stress responses—including salt stress. However, the method by which plants perceive exogenous melatonin and convert it into downstream signals remains unknown. The phyto-melatonin receptor holds promise for better understanding melatonin’s biological function and mechanism. Animal melatonin receptors were discovered earlier than the phyto-melatonin receptor. The first melatonin receptor (Mel1c) was cloned from frogs (Xenopus laevis) in 1994 [110]. Melatonin receptors belong to the G protein-coupled receptor (GPCR) superfamily, which possess seven transmembrane helices [111]. To date, a total of three melatonin receptor subtyoes have been reported in mammals; MT1 (Mel1a), MT2 (Mel1b), and MT3 (ML2) [112,113]. MT1 and MT2 are G protein-coupled receptors, which exhibit high-affinity for melatonin [112,114], while MT3 exhibits low affinity for melatonin and it belongs to the quinone reductases family [115].

AtCAND2/PMTR1, the first phyto-melatonin receptor, was recently discovered in Arabidopsis. When melatonin is perceived by CAND2/PMTR1, it triggers the dissociation of Gα form Gγβ, which activates the downstream H₂O₂ and Ca²⁺ signaling transduction cascade, leading to the phenotype of stomatal closure. Several studies have identified CAND2 as the first phyto-melatonin receptor. AtCAND2 is a membrane protein with seven transmembrane helices. Interaction with the unique G proteinαsubunit (GPA1) of Arabidopsis proved that CAND2 is a G protein-coupled receptor. ¹²⁵I-melatonin can bind to CAND2 in a specific and saturated manner. Arabidopsis AtCand2 mutant exhibits no changes in the stomatal aperture when treated with melatonin, while 10 μmol/L melatonin induced stomatal closure in the wild-type counterparts [114]. These data indicate that further research on CAND2/PMTR1-mediated signaling in salt stress is required. Moreover, the discovery of CAND2/PMTR1 provides a new method for finding other melatonin receptors in plants.

5. Conclusions and Future Perspectives

Melatonin, as an antioxidant and signaling molecule, modulates a wide range of physiological functions in bacteria, fungi, invertebrates, vertebrates, algae, and plants. It has been extensively studied in humans and other animals, while plant studies have lagged behind. In light of its importance and significance, more and more attention has focused on the biosynthesis and bio-function of melatonin in plants. It has become a research hotspot in the plant biology kingdom, with increasing research being conducted in recent years [116,117]. To promote related research in plant salt tolerance, we summarized the regulatory roles and mechanisms of melatonin in plants during salt stress resistance by reviewing recently published literature, and we finally propose a model (Figure 4).

First, salt stress or the application of exogenous melatonin improves endogenous melatonin levels in plants, which modulates the expression of genes involved in melatonin biosynthesis and metabolisms or assimilates exogenous melatonin directly [116]. Increased levels of endogenous melatonin occur mainly by upregulation of melatonin biosynthesis-related genes or absorption of exogenous melatonin by plants; both mechanisms require further investigation. Increased endogenous levels enhanced plant salt stress tolerance via several different pathways. The improvement of antioxidant capacity, ion homeostasis, photosynthetic capacity and the regulation of ROS, NO, hormone, and polyamine metabolism by melatonin in salt-stressed plants was discussed. Previous studies have shown that Ca²⁺ signaling plays important roles in salt stress tolerance [118]; however, little evidence of Ca²⁺ signaling was observed in the melatonin-induced salt stress tolerance. Therefore, whether melatonin enhances plants salinity resistance through Ca²⁺ signaling requires further investigation.

Genetic modification and RNA-sequencing analysis are effective tools in the identification of the putative target genes involved in melatonin-enhanced salt stress tolerance. TPH, a putative gene involved in serotonin biosynthesis, has not been cloned in plants yet. However, TDC and T5H, two genes involved in serotonin biosynthesis, have been identified in many plants, but have not been cloned in Arabidopsis. We suspect that other biosynthesis pathways of melatonin may also exist in plants.

Plant melatonin receptors have been the bottleneck in the study of phyto-melatonin in the past few decades. With the first phytomelatonin receptor discovered recently in Arabidopsis, the involvement of PMTR1-mediated phytomelatonin signaling in salt stress response requires updated exploration. In addition, three melatonin receptors MT1, MT2, and MT3, have been identified in mammals, the identification of new phytomelatonin receptors is another exciting field to explore. Further studies in this field might deepen our understanding of the biological functions and molecular mechanisms governing melatonin’s regulatory role during salt stress tolerance and beyond.

Figure 1. Phylogenetic relationship of the serotonin N-acetyltransferase (SNAT) genes from 10 plant species. The candidate SNAT genes involved in the phylogenetic tree include the dicots (Arabidopsis.thaliana (AT): AT1G26220.1, AT1G32070.1, and AT4G19985.1; Solanum lycopersicum (Solyc): Solyc05g010250.1.1, and Solyc10g074910.1.1; Glyma max (Glyma): Glyma.02G126500.1.p, Glyma.04G163300.1.p, Glyma.04G224700.1.p, Glyma.09G272400.1.p, and Glyma.18G216900.1.p), monocot (Zea mays (Zm): Zm00001d037778_P001, Zm00001d034969_P001, and Zm00001d038491_P001; Oryza sativa (LOC_Os): LOC_Os05g40260.1, LOC_Os05g44020.4, LOC_Os08g01170.1, and LOC_Os09g31310.1; Triticum aestivum (Traes): TraesCS5D02G146300.1, TraesCS7B02G228500.1, TraesCS7A02G327800.1, TraesCS7D02G324600.1, TraesCS5A02G145900.1, TraesCS1D02G301900.1, TraesCS5B02G144800.1, TraesCS1B02G312700.3, and TraesCS1A02G302500.3), Gymnospermae (Pinus taeda (PITA): PITA_000034298-RA), Pteridophyta (Selaginella moellendorffii: 271611, 449074, and 126619), Bryophyta (Physcomitrella patens (Pp): Pp3c22_4760V3.1.p, Pp3c3_11210V3.1.p, Pp3c11_26820V3.1.p, and Pp3c8_3980V3.1.p), and algae (Volvox carteri (Vocar): Vocar.0029s0059.1.p, Vocar.0004s0297.1.p, and Vocar.0024s0221.1.p)

Figure 2. Phylogenetic relationship of the N-acetylserotonin methyl-transferase (ASMT) genes from 10 plant species. The 10 plant species include A.thaliana, S.lycopersicum, G.max, Z.mays, O.sativa, T.aestivum, P.taeda, S.moellendorffii, P.patens, and algae.

Figure 3. Expression profiles of TDC, T5H, SNAT, and ASMT genes in wheat under salt stress conditions. The red or green colors represent the higher or lower relative abundance of each transcript in each sample, respectively.

Figure 4. Melatonin-mediated salt stress response in plants. Abbreviation: NO, nitric oxide; ROS, reactive oxygen species; Pn, net photosynthetic rate; ABA, abscisic acid; GA, gibberellin acid. ⊥: represents inhibition; and →: represents promotion.

Plant Species	Stress Condition	References
Actinidia deliciosa	Salt	[20]
Malus hupehensis	Salt	[21]
Arabidopsis thaliana	salt	[22]
Arabidopsis thaliana	Salt, drought and cold	[23]
Arabidopsis thaliana	Salt	[24]
Cynodon dactylon (L). Pers.	Salt, drought and cold	[25]
Chara australis	Salt	[26]
Chlamydomonas reinhardtii	Salt	[27]
Citrus aurantium L.	Salt	[28]
Cucumis sativus L.	Salt	[29]
Cucumis sativus L.	Salt	[17]
Cucumis sativus L.	Salt	[30]
Zea mays L.	Salt	[31]
Zea mays L.	Salt	[32]
Zea mays L.	Salt	[33]
Raphanus sativus L.	Salt	[34]
Raphanus sativus L.	Salt	[35]
Brassica napus L.	Salt	[36]
Brassica napus L.	Salt	[37]
Oryza sativa L.	Leaf senescence and salt	[38]
Oryza sativa L.	Salt	[39]
Glycine max	Salt and drought	[40]
Helianthus annuus	Salt	[41]
Helianthus annuus	Salt	[42]
Ipomoea batatas	Salt	[43]
Solanum lycopersicum	Salt	[44]
Vicia faba L.	Salt	[45]
Citrullus lanatus L.	Salt	[46]
Triticum aestivum L.	Salt	[47]

Supplementary Materials

Supplementary materials can be found at https://www.mdpi.com/1422-0067/20/3/709/s1.

Author Contributions

Conceptualization, X.N.; Formal Analysis, H.Z., T.Z., and S.L.; Resources, W.T. and W.S.; Data Curation, H.Z., X.W. and X.D.; Writing-Original Draft Preparation, H.Z.; Writing-Review and Editing, X.N. and W.S.; Supervision, W.S. and W.T.; Funding Acquisition, W.S. and X.N.

Funding

This work was mainly supported by the National Natural Science Foundation of China (Grant No. 31771778 and 31561143005). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

Acknowledgments

We are grateful to Hong Yue for her help with the phylogeny analysis, and Kewei Feng for his help on executing the figures.

Conflicts of Interest

The authors declare no conflict of interest.

© 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).

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