ARTICLE
Received 12 Feb 2013 | Accepted 28 May 2013 | Published 27 Jun 2013
Xie Wah Audrey Chan1,*, Carsten Wrenger2,3,*, Katharina Stahl2, Barbel Bergmann2,4, Markus Winterberg1, Ingrid B. Mller2,4 & Kevin J. Saliba1,5
Thiamine is metabolized into an essential cofactor for several enzymes. Here we show that oxythiamine, a thiamine analog, inhibits proliferation of the malaria parasite Plasmodium falciparum in vitro via a thiamine-related pathway and signicantly reduces parasite growth in a mouse malaria model. Overexpression of thiamine pyrophosphokinase (the enzyme that converts thiamine into its active form, thiamine pyrophosphate) hypersensitizes parasites to oxythiamine by up to 1,700-fold, consistent with oxythiamine being a substrate for thiamine pyrophosphokinase and its conversion into an antimetabolite. We show that parasites overexpressing the thiamine pyrophosphate-dependent enzymes oxoglutarate dehydrogenase and pyruvate dehydrogenase are up to 15-fold more resistant to oxythiamine, consistent with the antimetabolite inactivating thiamine pyrophosphate-dependent enzymes. Our studies therefore validate thiamine utilization as an antimalarial drug target and demonstrate that a single antimalarial can simultaneously target several enzymes located within distinct organelles.
1 Research School of Biology, College of Medicine, Biology and Environment, The Australian National University, Canberra, Australian Capital Territory 0200, Australia. 2 Department of Biochemistry, Bernhard Nocht Institute for Tropical Medicine, Bernhard-Nocht-Strasse 74, Hamburg D-20359, Germany. 3 Unit for Drug Discovery, Department of Parasitology, Institute of Biomedical Science, University of Sao Paulo, Avenida Professor Lineu Prestes 1374, Sao Paulo-SP 05508-000, Brazil. 4 Laboratory Mller, Department of Molecular Parasitology, Bernhard Nocht Institute for Tropical Medicine, Bernhard-Nocht-Strasse 74, Hamburg D-20359, Germany. 5 Medical School, College of Medicine, Biology and Environment, The Australian National University, Canberra, Australian Capital Territory 0200, Australia. * These authors contributed equally to this work. Correspondence and requests for materials should be addressed to I.B.M. (email: mailto:[email protected]
Web End [email protected] ) or to K.J.S. (email: mailto:[email protected]
Web End [email protected] ).
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DOI: 10.1038/ncomms3060 OPEN
Chemical and genetic validation of thiamine utilization as an antimalarial drug target
ARTICLE NATURE COMMUNICATIONS | DOI: 10.1038/ncomms3060
During its intraerythrocytic cycle, the human malaria parasite Plasmodium falciparum requires several extra-cellular nutrients to support its proliferation. Until
recently, an extracellular supply of thiamine (vitamin B1) was
not believed to be essential to the parasite, because (i) previous data were consistent with pantothenate (vitamin B5) being the only extracellular vitamin required by the parasite1,2 and (ii) genes coding for thiamine biosynthesis enzymes had been identied in the parasites genome3,4 and their functionality analysed using a heterologous approach5. Recent work, however, demonstrated that depletion of thiamine from erythrocytes is detrimental to parasite growth. Therefore, although the parasite is capable of synthesizing thiamine, its capacity to do so appears to be insufcient to meet its requirements6. The parasites thiamine biosynthesis pathway has been suggested to be a target for novel and much-needed antimalarials, either by direct inhibition of the enzymes or by channelling prodrugs into this parasite specic pathway7. However, interfering with the thiamine biosynthesis enzymes as an antimalarial strategy is promising only if the parasite is unable to source sufcient quantities of the vitamin extracellularly. The uptake and/or utilization of thiamine, therefore, represent more suitable targets, as inhibition of these processes should inhibit parasite proliferation.
Once synthesized (or taken up) by the parasite, thiamine is pyrophosphorylated by the enzyme thiamine pyrophosphokinase (PfTPK) to generate thiamine pyrophosphate (TPP)8, the active form of thiamine9. TPP is central to the activity of several enzymes10,11, particularly those involved in the metabolism of glucose. In P. falciparum, a number of enzyme activities are predicted to depend on TPP, including the E1 subunits of pyruvate dehydrogenase (PDH) and 2-oxoglutarate dehydrogenase (OxoDH), 3-methyl-2-oxobutanoate dehydrogenase, 1-deoxy-D-xylose phosphate synthase and transketolase3,7. Only three of these enzymes have been investigated so far inP. falciparum: (i) the PDH complex in the apicoplast, an algae-derived organelle in which fatty acid biosynthesis occurs12,(ii) the OxoDH complex in the mitochondrion13 and(iii) transketolase, the key enzyme of the non-oxidative arm of the pentose phosphate pathway14. Although these enzymes have been proposed to be potential drug targets, their essentiality to the intraerythrocytic growth of P. falciparum is still unclear. In fact, in a recent study using Plasmodium yoelii (a mouse malaria species), PDH has been shown to be essential only for the parasites progression from the liver stage15. It remains to be seen whether this is also the case for P. falciparum and whether PDH (or any of the other TPP-dependent enzymes) might serve as an antimalarial drug target.
In this study, we have used the thiamine analog, oxythiamine, genetically modied P. falciparum parasites and heterologously expressed P. falciparum enzymes to investigate whether thiamine utilization is a viable antimalarial drug target. We show that oxythiamine not only inhibits parasite growth in vitro but also in vivo in a mouse model of malaria. We go on to show that oxythiamine competes with thiamine as a substrate for TPK and that the resulting antimetabolite, oxythiamine pyrophosphate (OxPP), interacts with the parasite TPP-dependent enzymes PDH and OxoDH. Furthermore, we provide evidence that the parasite PDH and OxoDH E1 subunits are able to accept both pyruvate and oxoglutarate as substrates, raising the possibility that each enzyme is capable of compensating the loss of activity of the other.
ResultsInhibition of P. falciparum growth in vitro by oxythiamine. The thiamine analog oxythiamine (Fig. 1a) inhibited the in vitro
proliferation of the 3D7 strain of P. falciparum with an IC50 value of 5.20.3 mM (means.e.m.; n 6). In the absence of extra-
cellular thiamine (that is, in thiamine-free culture medium), a signicant increase in parasite sensitivity to oxythiamine was observed (Fig. 1b), resulting in a 450-fold decrease in the IC50
value (114 mM; means.e.m.; n 6; P 0.002, Mann
Whitney U-test). Increasing the thiamine concentration in the thiamine-replete culture medium by 100-fold (to 296 mM), however, had no signicant effect on the antiplasmodial potency of oxythiamine (IC50 5.50.5 mM; means.e.m.; n 6; P 0.81,
MannWhitney U-test; Fig. 1b). We also tested the anti-plasmodial activity of oxythiamine in the presence of 50 nM thiamine (the upper limit of the physiological plasma thiamine concentration16). We found that at this extracellular thiamine concentration, oxythiamine inhibited parasite growth with an IC50 of 233 mM (means.e.m.; n 3; Fig. 1b).
Antiplasmodial activity of oxythiamine in vivo. To investigate whether oxythiamine also possesses antiplasmodial activity in vivo, we administered oxythiamine (400 mg kg 1 per day for 3 days) orally to mice infected with Plasmodium vinckei vinckei and monitored the parasitemia and survival of the mice over 8 days. The parasitemia on day 5 post infection of oxythiamine-treated mice was signicantly lower, by almost sixfold, than that of vehicle (water)-treated mice (n 8; Poo0.001, Students t-test; Fig. 2a).
The survival time of oxythiamine-treated mice, relative to vehicle-treated mice, was also prolonged (Poo0.001, Students t-test;
Fig. 2b). As shown in Fig. 2c, the average body weight of mice in the control group did not change during the course of the experiment. However, body weight declined progressively with each daily dose of oxythiamine. After three doses, the average body weight of the mice had decreased by 13% (P 0.0002,
Students t-test). Following cessation of oxythiamine administration, all but one of the mice regained weight, such that 3 days after the administration of the nal dose, the average weight of the mice was statistically indistinguishable from their starting weight (P 0.16, Students t-test). The one mouse that
continued to lose weight had a detectable parasitemia and was euthanized.
Oxythiamine interacts with PfTPK. One potential target of oxythiamine in the parasite is PfTPK. Overexpression of PfTPK would therefore be expected to render the parasites resistant to oxythiamine. To investigate this possibility, we generated a parasite line expressing extra copies of PfTPK (referred to as 3D7-TPK ). The episomally expressed copies of PfTPK contained a
C-terminal streptavidin (strep) tag to allow conrmation of protein expression. As demonstrated in Fig. 3a, anti-strep antibodies readily detected the tagged version of PfTPK, which is absent in 3D7 parasites transfected with a mock plasmid (3D7-Mock17). As expected, anti-PfTPK antibodies detected two bands in western blots of 3D7-TPK (consistent with the endogenous (smaller band) and episomally expressed tagged versions of
PfTPK) and only a single band in those prepared from wild-type 3D7 parasites (Fig. 3a). The growth rate of 3D7-TPK was comparable to that of 3D7-Mock (Supplementary Fig. S1). The sensitivity of 3D7-TPK to oxythiamine was compared with that of 3D7-Mock in thiamine-replete and thiamine-free culture medium. 3D7-TPK was 1,700-fold (Fig. 3b) and 70-fold (Fig. 3c) more sensitive than 3D7-Mock to oxythiamine in thiamine-replete and thiamine-free culture medium, respectively (IC50 4.61.4 mM; means.e.m.; n 5; P 0.00046, Mann
Whitney U-test, and IC50 0.250.05 mM; means.e.m.; n 5;
P 0.0016, MannWhitney U-test, in thiamine-replete and
thiamine-free culture medium, respectively). As expected, the
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NATURE COMMUNICATIONS | DOI: 10.1038/ncomms3060 ARTICLE
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Figure 1 | Oxythiamine structure and in vitro antiplasmodial activity. (a) Chemical structures of thiamine and oxythiamine. (b) In vitro antiplasmodial activity of oxythiamine against P. falciparum (strain 3D7) in thiamine-free RPMI-1640 medium (lled circles), and in the presence of 50 nM (open triangles),2.96 mM (open circles) or 296 mM thiamine (lled triangles). The data are averaged from three (open triangles) or six (all the others) independent experiments, each performed in duplicate and are shown s.e.m. Where not shown, error bars are smaller than the symbols.
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Figure 2 | In vivo antimalarial activity of oxythiamine. (a) Average parasitemia at day 5 post infection/start of treatment in P. vinckei vinckei-infected mice treated orally with vehicle (water) control and oxythiamine (400 mg kg 1 per day for 3 days). Error bars represent s.e.m. (n 78). (b) Survival time of
mice following treatment with vehicle control (lled circles) and oxythiamine (open triangles; 400 mg kg 1 per day for 3 days) starting on the day of infection. (c) Average weight of mice treated orally with water (vehicle control; lled circles) and oxythiamine (open triangles). Error bars represent s.e.m.
(n 78). For clarity, only positive or negative error bars are shown.
sensitivity of the 3D7 and 3D7-Mock parasite lines to oxythiamine was similar in both culture media (data not shown).
The increased sensitivity of 3D7-TPK to oxythiamine is not consistent with PfTPK being the target of oxythiamine. It is consistent, however, with oxythiamine being a substrate for PfTPK, and with the overexpressed PfTPK generating a higher concentration of a toxic oxythiamine metabolite within the parasite. We therefore tested whether oxythiamine is a substrate for heterologously expressed PfTPK. Oxythiamine was indeed metabolized by PfTPK with a KM value of 14531 mM and a specic activity of 7914 nmol min 1 mg 1 (mean
s.e.m.; n 4; Fig. 3d).
Downstream effect on TPP-dependent enzymes. In light of the fact that PfTPK accepts oxythiamine as a substrate, presumably generating OxPP, we explored the hypothesis that the mechanism of action of oxythiamine is via the generation of toxic OxPP that interacts with TPP-dependent enzymes, rendering them nonfunctional. To test this hypothesis, we generated two additional transgenic parasite lines expressing extra copies of either the
TPP-binding subunit of the P. falciparum PDH E1-a (3D7-PDH ) or the E1 subunit of the P. falciparum OxoDH (3D7-OxoDH ).
To conrm their expression within the parasite, the constructs were strep-tagged and visualized as single bands of the expected size on western blots using a monoclonal anti-strep antibody (Fig. 4a). The growth rates of 3D7-OxoDH and 3D7-PDH were similar to that of 3D7-Mock and 3D7-TPK (Supplementary Fig. S1).
If either PfOxoDH or PfPDH is essential for parasite survival during its intraerythrocytic stage, and if the antiplasmo-dial activity of oxythiamine is via the generation of OxPP that inactivates one or both of these enzymes, overexpression of the inhibited enzymes should render the parasite relatively resistant to oxythiamine compared with wild-type parasites. We therefore explored the sensitivity of 3D7-OxoDH and 3D7-PDH to oxythiamine in thiamine-free and thiamine-replete culture medium. The sensitivity of 3D7-PDH and 3D7-OxoDH to oxythiamine in thiamine-replete culture medium was indifferent to that of 3D7-Mock (IC50 8.10.9
mM; n 7 and 8.41.4 mM; n 4, respectively; means.e.m.;
P40.75, MannWhitney U-test; Fig. 4b). On the other hand, in thiamine-free culture medium, 3D7-OxoDH and 3D7-PDH
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ARTICLE NATURE COMMUNICATIONS | DOI: 10.1038/ncomms3060
a b
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Figure 3 | Analysis of 3D7-TPK parasites and in vitro phosphorylation of oxythiamine. (a) Western blot analysis of 3D7-TPK using monoclonal anti-strep (rst two lanes) and anti-TPK antibodies (last two lanes). Wild-type 3D7 parasites and 3D7-Mock are used as controls. (b) Antiplasmodial activity of oxythiamine against P. falciparum 3D7-Mock (lled circles) and 3D7-TPK (open circles) parasite lines in thiamine-replete culture medium. (c) Antiplasmodial activity of oxythiamine against P. falciparum 3D7-Mock (lled circles) and 3D7-TPK (open circles) parasite lines in thiamine-free culture medium. The data are averaged from at least three independent experiments, each performed in duplicate and are shown s.e.m. Where not shown, error bars are smaller than the symbols. (d) MichaelisMenten analysis of oxythiamine pyrophosphorylation using heterologously expressed and puried PfTPK (KM of 14531 mM). The data were analysed with SigmaPlot and are averaged from four independent experiments, each carried out in duplicate and are shown s.e.m.
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Figure 4 | Analysis of 3D7-PDH and 3D7-OxoDH transgenic parasite lines. (a) Western blot analysis of transgenic parasites using monoclonal anti-strep antibodies. (b) Antiplasmodial activity of oxythiamine against P. falciparum 3D7-Mock (lled circles), 3D7-OxoDH (open squares) and 3D7-PDH (lled triangles) lines in thiamine-replete culture medium. (c) Antiplasmodial activity of oxythiamine against P. falciparum 3D7-Mock (lled circles), 3D7-
OxoDH (open squares) and 3D7-PDH (lled triangles) lines in thiamine-free culture medium. The data are averaged from at least three independent experiments, each performed in duplicate and showed s.e.m. Where not shown, error bars are smaller than the symbols.
were 15-fold (IC50 26339 mM; means.e.m.; n 3; P 0.012,
MannWhitney U-test) and 9-fold (IC50 15842 mM; mean
s.e.m.; n 4; P 0.004, MannWhitney U-test) more resistant to
oxythiamine, respectively (Fig. 4c).
To exclude the possibility that the altered oxythiamine sensitivity observed in the 3D7-PDH , 3D7-OxoDH and 3D7-TPK transgenic parasites (Figs 3b,c and 4c) is due to off-target effects generated during the drug-selection process, we
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NATURE COMMUNICATIONS | DOI: 10.1038/ncomms3060 ARTICLE
Fold change in mRNA level
(relative to 3D7-Mock)
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PfPDH PfPOxoDH Pf TPK
Figure 5 | mRNA expression in transgenic parasite lines. The data are normalized to aldolase, and the fold change in PfPDH, PfOxoDH and PfTPK mRNA expression is shown relative to the levels observed in 3D7-Mock parasites. The box indicates the 2575 percentiles, the error bars show the range and the middle line represents the median. The data were generated from 410 independent experiments.
tested their sensitivity to the antimalarial chloroquine and found that it was unaltered (Supplementary Fig. S2). Furthermore, to conrm overexpression of the target genes, we used quantitative PCR to compare the mRNA levels of PfPDH, PfOxoDH and PfTPK in the transgenic parasites relative to their mRNA levels in 3D7-Mock parasites (Fig. 5). We found signicantly higher levels of mRNA for all three genes in the corresponding transgenic parasite line (112-, 4.40.4- and 8.00.6-fold increases for PfPDH, PfOxoDH and PfTPK, respectively; means.e.m.; n 410; Po0.001 in each case, analysis of
variance Dunnetts test).
OxPP binds to PfPDH and PfOxoDH in situ. The data showing that PfTPK is able to metabolize oxythiamine in vitro (Fig. 3d) and that parasites overexpressing TPP-dependent enzymes are resistant to oxythiamine (Fig. 4c) are consistent with the parasite converting oxythiamine to OxPP and with OxPP inactivating one or more TPP-dependent enzymes. To investigate this, we used high-performance liquid chromatography (HPLC) to detect OxPP generated by the parasite from oxythiamine in situ and which had been immobilized from parasite-puried PfPDH and PfOxoDH. Thiamine, oxythiamine, TPP and OxPP had distinct retention times of 0.875, 0.695, 0.605 and0.432 min, respectively, and were easily detectable (Fig. 6). We then treated erythrocytes infected with 3D7-PDH and 3D7-
OxoDH trophozoites with the IC50 concentration of oxythiamine (5.2 mM) in the presence of thiamine (2.96 mM) or the IC50 concentration of oxythiamine (11 mM) in the absence of thiamine (Fig. 1) for 5 h, and puried the strep-tagged PfPDH E1 and PfOxoDH E1 subunits via afnity chromatography from the corresponding transgenic parasites. Control parasites incubated in the presence of thiamine, but in the absence of oxythiamine, were also analysed. Cofactors that co-eluted with the puried proteins were then detected using HPLC. A single major metabolite was co-puried with both proteins (Fig. 6) under all experimental conditions. As expected, in oxythiamine-free control samples (Fig. 6a,d) the cofactor from both PfPDH and PfOxoDH had a retention time of 0.6090.003 min (meanrange/2), consistent with the cofactor being TPP. In oxythiamine-treated samples, the major metabolite had a retention time of 0.4330.002 min (means.e.m.) for both
PfPDH E1 (Fig. 6b,c) and PfOxoDH E1 (Fig. 6e,f) subunits, consistent with the cofactor being OxPP. To conrm that the peak derived from oxythiamine-treated parasites was not TPP, samples were spiked with TPP and re-analysed by HPLC (Fig. 6b,c,e,f, dashed lines). The cofactor bound to the target proteins in oxythiamine-treated samples is clearly distinct from the natural cofactor TPP (asterisks in Fig. 6). Our data, therefore, are consistent with the parasite synthesizing OxPP in situ and with OxPP binding to TPP-dependent enzymes.
Activity and localization of PfPDH and PfOxoDH. If one considers the relative resistance to oxythiamine of the 3D7-PDH and 3D7-OxoDH parasite lines (when compared with 3D7-Mock) in isolation, it is reasonable to conclude that
PfPDH and PfOxoDH are essential for parasite viability and that they are the target of oxythiamine. If considered collectively, however, it is unclear why the overexpression of PfOxoDH should render the parasites resistant to oxythiamine if PfPDH is the target for the antiplasmodial activity of oxythia-mine. The converse is, of course, also true; if PfOxoDH is the target, how does PfPDH overexpression convey oxythiamine resistance to the parasites? We considered two possible explanations for this observation. The rst is that both enzymes compete for the antimetabolite (OxPP). Overexpression of either enzyme would, therefore, reduce the effective concentration of OxPP within the parasite and allow the other TPP-dependent enzyme to bind to TPP and function normally. The second is that PfPDH and PfOxoDH are able to compensate for each others activity. For the second explanation to be true, PfPDH and PfOxoDH must accept both pyruvate and oxoglutarate as substrates, and the enzymes need to be located at the same site(s) as both substrates.
To determine whether PfPDH and PfOxoDH are able to accept each others normal substrates, the activity of the recombinantly expressed E1 subunits of PfOxoDH and PfPDH (a and b, co-puried) was analysed biochemically. Both subunits are able to accept pyruvate and oxoglutarate as demonstrated by their similar specic activities for both substrates (Table 1).
To conrm their location within the parasite, parasites expressing green uorescent protein (GFP)-tagged versions of the rst 100 amino acids of the N terminus of each enzyme subunit were generated. The expression of the GFP chimeras in the parasite was conrmed by western blot analysis using anti-GFP antibodies (Fig. 7a). As described previously12, the E1-a subunit of PfPDH localizes to a discrete organelle adjacent to the mitochondrion and distinct from the nucleus, consistent with an apicoplast localization (Fig. 7b; top panel). The truncated E1 subunit of PfOxoDH, which has been predicted to have a mitochondrial localization13, colocalizes with MitoTracker when fused to GFP (Fig. 7b; bottom panel), consistent with a mitochondrial localization. Although the localization was as predicted, it should be noted that the tagged proteins were expressed under a non-authentic promotor, and this may inuence the localization of the protein18.
DiscussionOxythiamine has been previously shown to inhibit the in vitro growth of P. falciparum19, although investigations into its mechanism of action have not been carried out. Studies in yeast showed that oxythiamine reduces the uptake of thiamine by 45% (ref. 20) and inhibits TPP-dependent enzymes21. Furthermore, oxythiamine inhibits cancer cell growth by acting as a thiamine antagonist and an inhibitor of transketolase22. We therefore investigated whether oxythiamine inhibits P. falciparum growth
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a b c
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Figure 6 | Detection of TPP and OxPP bound to PfPDH and PfOxoDH. HPLC analysis showing the major metabolite detected from strep-tagged afnity-puried PfPDH from 3D7-PDH parasites (ac) and PfOxoDH from 3D7-OxoDH parasites (df) incubated in normal RPMI-1640 (a,d), normal
RPMI-1640 in the presence of 5.2 mM oxythiamine (b,e) and thiamine-free RPMI-1640 in the presence of 11 mM oxythiamine (c,f). In b and c, the dashed lines in the background show the separation of the standards (OxPP, TPP, oxythiamine and thiamine) to enable the identication of the metabolite.
The dashed lines in b, c, e and f represent an identical sample as that shown by the solid line, but which had been spiked with 1 mM TPP (peak indicated by the asterisk) to illustrate that the cofactor bound to the target protein when the parasites had been treated with IC50 concentrations of oxythiamine is distinct from TPP. The traces are representative of those obtained in two independent afnity-purication experiments.
Table 1 | Activity prole of the recombinant E1 subunits of PfPDH and PfOxoDH
Subunit Substrate
Specic activity(nmol mg 1 min 1) n
PfPDH E1 a b Pyruvate 5.90.7 5
PfPDH E1 a b 2-Oxoglutarate 8.70.8 7
PfOxoDH E1 2-Oxoglutarate 7.90.9 5 PfOxoDH E1 Pyruvate 4.30.4 4
Errors represent s.d.
by interfering with the parasites thiamine-utilization pathway and whether it is active in vivo.
The antiplasmodial activity of oxythiamine increases in response to the extracellular thiamine concentration being reduced (Fig. 1b), consistent with oxythiamine interfering with the uptake and/or metabolism of thiamine in a competitive manner. In the presence of 2.96 mM thiamine, the antiplasmodial activity of oxythiamine is poor (IC50 5.2 mM), but in the
presence of 50 nM thiamine, the upper limit of thiamine in human serum16, the antiplasmodial activity of oxythiamine is substantially higher, with an IC50 of 23 mM. Increasing the extracellular thiamine concentration by 100-fold (to 296 mM) had no effect on the antiplasmodial activity of oxythiamine (Fig. 1b). Although it is unclear why this would be the case, one possibility is that at high concentrations, oxythiamine kills the parasite via an effect that is unrelated to thiamine utilization. Another possibility is that one or more parasite thiamine-utilization steps become saturated at high thiamine concentrations. Under these conditions, increasing the extracellular thiamine
concentration further has no effect on the antiplasmodial activity of oxythiamine.
Oxythiamine (400 mg kg 1 per day for 3 days) was effective at reducing the parasite burden of P. vinckei vinckei-infected mice by more than 80% (Fig. 2a) and increasing the survival of the mice (albeit marginally; Fig. 2b). However, the reduction in mouse body weight (Fig. 2c), which we ascribe to oxythiamine-induced toxicity, is obviously undesirable, but it was also unexpected, given the results of earlier studies investigating the anti-tumour effect of oxythiamine in mice23,24. Ras et al.24 administered doses as high as 500 mg kg 1 per day for 4 days and lower doses of 300 mg kg 1 per day for 14 days without observing toxicity. A more recent study25 using similar oxythiamine doses to Ras et al.24, but administering the drug orally for a period of up to 5 weeks, also reported no toxicity. The discrepancy between our study and previous reports on the lack of oxythiamine toxicity2325 is unclear.
It is worth noting that the high dose of oral oxythiamine required in this and previous studies may be due to a concomitant low plasma concentrations of oxythiamine, as has been previously shown to be the case for orally administered thiamine in humans26. Therefore, although oxythiamine is unlikely to be developed as an antimalarial in its own right, we propose that it can serve as a starting point from which to design antimalarials targeting this pathway. Another factor to consider in developing antimalarials that target the parasites thiamine-utilization pathway is the reported association between P. falciparum malaria and thiamine deciency27,28. The reason for this association is unclear, but may be related to the increase in the basal metabolic rate (and hence thiamine utilization) because of the febrile nature of the illness28. The reduced thiamine concentrations in these individuals would be predicted to
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a b Phase Hoechst GFP MitoTracker Merge
Phase Hoechst GFP MitoTracker Merge
OxoDH
PDH
3D7
kDa 75
50
37
25
20
PDH
OxoDH
Anti-GFP
Figure 7 | Localization of PfPDH and PfOxoDH within erythrocytes infected with 3D7 parasites. (a) Western blot analysis of transgenic parasites expressing GFP-tagged leader sequences of PfPDH and PfOxoDH using monoclonal anti-GFP antibody. Wild-type 3D7 parasites are included as a control. (b) Localization of PfPDH (top panel) and PfOxoDH (bottom panel) in transgenic parasites. The left column shows phase contrast images, followed by uorescence images of a nuclear dye (Hoechst; blue), GFP-tagged leader sequences of the target enzymes (green), a mitochondrial dye (MitoTracker; red) and all four images merged together (right column). Scale bars, 2 mm.
Apicoplast
Parasite
ATP
AMP
Thiamine
TPP
Pf TPK
Mitochondrion
2-Oxoglutarate
Suc-CoA
Pyruvate
Ac-CoA
2-Oxoglutarate
Suc-CoA
Erythrocyte
PfOxoDH
Metabolite exchange?
PfPDH
Pyruvate
Ac-CoA
OxPP
AMP
PfTPK
Other TPP-dependent enzymes
ATP
Oxythiamine
Figure 8 | P. falciparum thiamine utilization and mechanism of action of oxythiamine. Thiamine is metabolized to its active form, TPP, by PfTPK in an ATP-dependent manner. TPP is essential as a cofactor for the enzymes PfOxoDH in the mitochondrion and PfPDH in apicoplast. We show that the thiamine analog, oxythiamine, is metabolized by PfTPK, and the resulting metabolite, OxPP, likely inhibits the activity of PfPDH, PfOxoDH and other TPP-dependent enzymes. The pathways shown in black represent established or previously suggested pathways, whereas the pathways in red illustrate mechanisms identied in this study or that would need to be present in order for one of the models proposed in this study to hold.
enhance the antiplasmodial activity of inhibitors that act competitively with thiamine (such as oxythiamine), but such inhibitors may also exacerbate the hosts thiamine deciency. It is therefore important that the compounds specically target the parasite.
To investigate the mode of action of oxythiamine, we overexpressed enzymes (Fig. 5) involved in the metabolism of thiamine. Parasites overexpressing PfTPK became hypersensitive
to oxythiamine (Fig. 3b,c). At least one earlier study29 has shown increased drug sensitivity as a result of targeted overexpression of a parasite protein (involved in vitamin B6 metabolism), but this increased sensitivity was subtle when compared with that observed here. The increased oxythiamine sensitivity of 3D7-PfTPK parasites, together with our demonstration that oxythiamine is a substrate of PfTPK (Fig. 3d) with an afnity that is approximately only twofold lower than that of thiamine8,
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are consistent with the increased sensitivity of 3D7-PfTPK to oxythiamine being due to an increased generation of toxic OxPP via the action of PfTPK (see Fig. 8 for schematic representation).
Previous P. falciparum studies have shown that overexpression of an endogenous protein can result in resistance to drugs that inhibit the overexpressed protein. Typically, these studies30,31 showed relatively modest increases (23-fold) in IC50 values. Our demonstration that parasites overexpressing the thiamine-binding subunits of PfPDH or PfOxoDH are 9- and 15-fold, respectively, more resistant to oxythiamine in thiamine-free medium (Fig. 4c), therefore, represents considerably larger alterations to drug sensitivity. These observations are consistent with oxythiamine being an antimetabolite. In thiamine-replete culture medium, the oxythiamine sensitivity of parasites overexpressing PfOxoDH or PfPDH is unchanged (Fig. 4b). This is not surprising, because under these conditions the parasites sensitivity to oxythiamine is not affected by higher extracellular thiamine concentrations (Fig. 1b). The fact that increased resistance to oxythiamine is observed only in thiamine-free medium is consistent with the activity being due to a thiamine-related effect, rather than a general drug-resistance phenotype.
The demonstration that OxPP is synthesized by the parasite from oxythiamine and that OxPP binds to PfOxoDH and PfPDH in situ (Fig. 6) is consistent with OxPP binding (as an unnatural cofactor) to TPP-dependent enzymes and rendering them non-functional, thereby killing the parasite (Fig. 8). A similar hypothesis has been put forward for the mode of action of oxythiamine against Saccharomyces cerevisiae21. The P. falciparum transketolase (another TPP-utilizing enzyme) has recently been shown in in vitro studies to bind to, and be inactivated by, OxPP32, providing additional support for our model. It is likely that additional P. falciparum TPP-dependent enzymes are also targeted by OxPP, but this remains to be investigated.
Unlike eukaryotic cells where PDH is located within mitochondria, in P. falciparum PDH is located within the apicoplast12 (Fig. 7b, top panel). Deletion of PDH in the rodent malaria parasite P. yoelii results in a defect in the parasites ability to mature during the late liver stage, and the parasites cannot initiate a blood stage infection15. However, the parasites are able to undergo a normal intraerythrocytic cycle, suggesting that PDH is not essential for intraerythrocytic growth of the parasite15. A nding that appears to be supported by the suggestion that the only essential apicoplast metabolic pathway is isoprenoid precursor biosynthesis33. Our observation that 3D7-PDH parasites are resistant to oxythiamine in thiamine-free medium is consistent with PfPDH being a target of oxythiamine and with the enzyme being essential for intraerythrocytic parasite growth. A similar argument can be made for PfOxoDH. In eukaryotes, PfOxoDH is a mitochondrial protein and we conrm that this is also the case in P. falciparum (Fig. 7b, bottom panel). PfOxoDH catalyses the synthesis of succinyl-CoA from 2-oxoglutarate (Fig. 8). In P. falciparum, succinyl-CoA is required (in the rst step) for the de novo haem synthesis, which is believed to be an essential pathway for the parasite34. One interpretation of our data, therefore, is that both PfOxoDH and PfPDH (both of which we show bind to OxPP generated from oxythiamine) are essential for intraerythrocytic parasite proliferation. Overexpression of just one of the two enzymes overcomes OxPP-induced inhibition of the other by acting as an OxPP sink, and thereby reducing the effective concentration of toxic OxPP within the parasite (Fig. 4). We cannot, however, exclude the possibility that neither (or only one) of them is essential for intraerythrocytic parasite development. Overexpression of PfPDH or PfOxoDH could simply serve to steer OxPP away from an additional TPP-
dependent enzymesthe real targets of oxythiamines antiplasmodial activity. In fact, the antiplasmodial activity of oxythiamine is likely to involve the simultaneous inhibition of multiple essential TPP-dependent enzymes.
Our demonstration that heterologously expressed PfPDH E1 and PfOxoDH E1 are both capable of accepting 2-oxoglutarate and pyruvate as substrates (Table 1) also opens up the possibility that both enzymes are capable of compensating for the functionality of the inhibited enzyme. Whether this would be possible, given the apparent distinct localization of PfOxoDH and PfPDH (Fig. 7b), remains to be seen. For this compensatory functionality to take place, it would require that the substrates (2-oxoglutarate and pyruvate) for each enzyme have access to both enzymes in their respective organelles. Their reaction products (succinyl-CoA and acetyl-CoA) would also need to be able to leave the surrogate organelle in which they were synthesized and, if necessary, enter the organelle within which they are required (Fig. 8). The movement of these substrates and products across the mitochondrial and apicoplast membranes would be expected to take place via specic transporters. Another possibility, however, is direct exchange of metabolites between the mitochondrion and apicoplast (Fig. 8). These organelles are known to be in very close proximity of each other3537, presumably because of the shared biosynthetic pathways (for example, haem biosynthesis4,38), and direct metabolite exchange might therefore be possible.
In summary, our data validate thiamine utilization byP. falciparum as an antimalarial drug target. In addition, given that both the apicoplast and the mitochondrion have been suggested to possess pathways that are viable antimalarial drug targets3942, the demonstration here that a single drug is shown to interact with enzymes in both of these organelles, and inhibit at least one pathway that is essential to the intraerythrocytic development of the parasite, provides support for a multi-target antimalarial strategy using a single pharmacophore, potentially delaying the development of resistance. Our data also provide novel insights into possible redundancies between the mitochondrial and apicoplast biochemical pathways.
Methods
Materials. Albumax II, HEPES and gentamycin, TRIZOL, Super-ScriptIII Reverse Transcriptase, SuperScript III One-Step RT-PCR System with Platinum Taq DNA Polymerase and RNaseOUT were obtained from Invitrogen. 2.5 RealMasterMix/ 20 SYBR Green kit was purchased from 5 PRIME, Germany. Automated
sequencing of nucleic acids was done by Seqlab, Germany. [3H]Hypoxanthine (specic activity 30 Ci mmol 1; 0.03 mM) was purchased from American Radiolabeled Chemicals, and Microscint-O scintillation uid was from PerkinElmer.
Restriction enzymes and ligase were purchased from New England Biolabs, USA. Oligonucleotides were from Sigma-Aldrich, Germany. The cloning vector pASKIBA3, Strep-Tactin-Sepharose, monoclonal Strep-tag II antibody, anhydrotetracycline and desthiobiotin were from Institut fr Bioanalytik (IBA, Germany). The DNaseI was purchased from Promega, Germany, the vac SVC100 was purchased from Savant, Germany, and the Diode Array Detector was purchased from Dionex, USA. [U-14C] ATP (50 Ci mmol 1) was from ARC, USA. PEI-cellulose F-coated
Polygram sheets were from MERCK, Germany. All other chemical reagents were purchased from Sigma-Aldrich. Buffy coat-poor group O erythrocytes were provided by the Canberra Branch of The Australian Red Cross Blood Service, and
A erythrocytes were purchased from the Blood Bank of University Medical Center Hamburg-Eppendorf, Germany. RPMI-1640 culture medium with bicarbonate was obtained from the John Curtin School of Medical Research Media Facility (Australia) and AppliChem (Germany). Complete medium was prepared by supplementing the RPMI-1640 culture medium with 25 mM HEPES, 11 mM D-glucose, 200 mM hypoxanthine, 24 mg ml 1 gentamycin and 0.6% (w/v)
Albumax II. Thiamine-free medium was prepared according to Sigma-Aldrichs RPMI-1640 culture medium formulation except that thiamine was omitted. Low-hypoxanthine medium (either in the presence or absence of thiamine)was prepared by supplementing RPMI-1640 culture medium with 25 mM HEPES, 11 mM D-glucose, 3 mM hypoxanthine, 24 mg ml 1 gentamycin and 0.6%
(w/v) Albumax II. A medium with a high thiamine concentration was prepared by supplementing the thiamine-free medium with 296 mM thiamine.
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In vitro culture of P. falciparum. Intraerythrocytic 3D7 and transgenic (see below) strains of P. falciparum parasites were maintained in continuous culture as described previously43 with modications44,45.
Heterologous expression of PfPDH E1 and PfOxoDH E1. The open-reading frames encoding either OxoDH E1 or PDH E1 (a and b) were amplied fromP. falciparum 3D7 total RNA using the SuperScript III One-Step RT-PCR System with Platinum Taq DNA Polymerase and the oligonucleotides shown in Supplementary Table S1. The PCR products obtained were digested with either BsaI only or SacII and NcoI and cloned into the expression plasmid pASK-IBA3, yielding the expression constructs IBA3-OxoDH E1-strep, IBA3-PDH E1a-strep and IBA3-PDH E1b-his, respectively. Recombinant expression in Escherichia coli BLR (DE3) and PDH E1b-his co-purication were carried out as described previously46.
Generation of transgenic parasite lines. The transfection constructs were generated by PCR using Pfu-polymerase on the IBA3-OxoDH E1-strep, IBA3-PDH E1a-strep and PfTPK-IBA3 (ref. 8) as templates using the oligonucleotides listed in
Supplementary Table S1. The resulting PCR products were digested with KpnI, or XmaI and AvrII, and cloned into the transfection vector pARL1a47, yielding the respective constructs for overexpression pARL-OxoDH E1-strep, pARL-PDH E1astrep and pARL-TPK-strep. The GFP chimeras pARL-OxoDH-E1-GFP and IBA3-PDH E1a-GFP contain the rst 100 amino acids of the N terminus of the respective protein fused to GFP. The constructs and the pARL1a vector (as mock plasmid) were transfected into P. falciparum and selected as described previously29,48.
Western blot and localization of transgenic parasites. Transgenic parasites were identied by plasmid rescue (data not shown), and expression of the fusion proteins in the parasite was analysed by western blot using cell lysate and either a monoclonal anti-strep antibody (1:5000) or a monoclonal anti-GFP antibody (1:5000), and a secondary anti-mouse HRP coupled antibody (1:20000) as described previously48. GFP uorescence of parasites, treated with 50 nM WR99210, was analysed by uorescence microscopy, and counterstaining was performed using Hoechst 33342 (ref. 48) for nucleus and 0.833nM MitoTracker Red CMX-ROS to identify the mitochondrion.
RNA extraction and reverse-transcriptase quantitative PCR. Total RNA was extracted from asynchronous, saponin-isolated, transgenic parasites using TRIZOL following the manufacturers instructions, digested with RQ1-RNasefree DNaseI for at least 1 h at 37 C, stopped by incubation for 10 min at 65 C and extracted by isopropanol. Synthesis of cDNA was accomplished with 200 U Super-ScriptIII Reverse Transcriptase from 1 mg RNA using 0.5 mM dNTP, Random Primer (250 mg), 5 mM dithiothreitol and 40 U RNaseOUT in 20 ml for 2 h at 42 C. Super-ScriptIII Reverse Transcriptase was omitted as negative control for the subsequent real-time quantitative PCR using 2.5 RealMasterMix/20 SYBR Green kit as
previously described49 with the gene-specic primers (10 pmol each), designed with Primer 3 (ref. 50) yielding products of 8090 bp (Supplementary Table S2), and 50 ng cDNA prepared on the day of the experiment with the following amplication conditions: 95 C for 2 min, followed by 35 cycles at 95 C for 15 s, 49 C for 20 s and 68 C for 20 s, and a melting step ramping from 6795 C. In each experiment from separate preparations of cDNA, each sample was analysed in duplicate. Aldolase was used for normalization51. RNA extracted from the MOCK-plasmid-carrying parasite line served as calibrator, and relative changes in the target cell line were measured using the 2 DDCT method52. Analysis was performed with the Corbett Rotor-Gene 6.1.81 software. Specicity of amplication was ascertained by melting-curve analysis of each PCR product using 3D7 gDNA.
Pulldown of strep-tagged PfOxoDH E1 and PfPDH E1. Parasites overexpressing PfOxoDH E1-strep or PfPDH E1-a-strep were separated from noninfected erythrocytes via a discontinuous Percoll-alanine gradient as described previously53, cultivated for 5 h at 37 C in either thiamine-free RPMI-1640 medium containing 11 mM oxythiamine or thiamine-replete RPMI-1640 (containing 2.96 mM thiamine)
in the presence or absence of 5.2 mM oxythiamine. The cells were washed in prewarmed (37 C) human tonicity-PBS (1 min at 16 000 g). The cell pellets, isolated from 300 ml culture and at least 10% parasitemia, were resuspended in 500 ml buffer W (100 mM Tris-HCl and 150 mM NaCl), subjected to three freeze-thaw cycles and sonied in a Branson sonier at low input for 20 20s
pulses before the soluble protein fraction was separated by a centrifugation step of 20,000 g for 2 h at 4 C. PfOxoDH E1-strep and PfPDH E1-a-strep were puried via afnity chromatography using 50 ml of packed streptactin-matrix. The samples were washed three times with buffer W, eluted with buffer W containing desthiobiotin and dried in the speed vac SVC100 before HPLC analysis.
HPLC and MS analysis. Commercially available thiamine, TPP and oxythiamine were used as HPLC standards (dissolved in water at a concentration of 100 mM). OxPP is not commercially available and was therefore synthesized enzymatically.
Heterologously expressed and puried PfTPK (15 mg), prepared as described previously8, was used to pyrophosphorylate 50 nmol of oxythiamine. The reaction, described previously54, was performed for 6 h at 37 C, and the reaction products were subsequently dried in a speed vac SVC100. In a separate assay, the conversion of ATP to ADP in the presence of thiamine and [14C]-labelled ATP was used to ensure a positive enzyme reaction. The identity of OxPP was conrmed using mass spectrometry. Mass spectra were recorded on an Agilent 6550 QTOF with attached Agilent 1260 Auto-sampler, Column Compartment and 1290 Binary Pump. Chromatographic separation was carried out using isocratic elution in an Agilent XDB-C18 RRHD column (1.8 mm, 2.1 100 mM) using a mobile phase of 95%
10 mM ammonium carbonate/5% acetonitrile. Calculated 426.0290 for C12H18N3O8P2S; found 426.0294 (0.98 p.p.m. difference). MS/MS fragmentation provided additional evidence that the peak at 426.0294 m/z is OxPP (Supplementary Fig. S3). HPLC samples were analysed using a Dionex Ultimate 3000 RSLC HPLC system equipped with a Diode Array Detector set to 265 nm. The absorbance maxima for the standards were determined in preliminary experiments using 3D-FIELD with a range of 200800 nm. A Phenomenex Kinetex C18 column (1.7 mm, 2.1 100 mM) with the appropriate guard column was
used at 35 C with a ow rate of 0.5 ml min 1. The mobile phase consisted of 100 mM ammonium acetate, pH 7.0, containing 5% (v/v) acetonitrile. An injection volume of 5 ml was used.
Enzyme assays. Before determining the specic activity of the recombinantly expressed subunits of PfPDH E1 (a b, co-puried) as well as PfOxoDH E1, their
purity was veried by SDS-PAGE (data not shown). The enzyme activity was followed by photospectroscopy at 600 nm using the electron acceptor 2,6-dichloroindophenol sodium salt (DCIP) as described previously55. The reaction buffer (50 mM KH2PO4 and 2 mM MgCl2, pH 7) contained 200 mM TPP, 80 mM
DCIP, 2 mM pyruvate/oxoglutarate and 50 mg enzyme. Specic activity was calculated using the molar extinction coefcient of 21 mM 1 cm 1 of DCIP.
The pyrophosphorylation of oxythiamine was determined by thin layer chromatography using [14C]ATP as described previously54. The apparent KM value was calculated from rectangular hyperbola tted curves using SigmaPlot computer software.
In vitro antiplasmodial assay. The in vitro antiplasmodial activity of oxythiamine was measured using the [3H]hypoxanthine incorporation assay as described previously45,56,57. Infected erythrocytes were exposed to twofold serial dilutions of oxythiamine in the appropriate thiamine-free or thiamine-replete medium, containing low hypoxanthine (3 mM) in the 96-h assay. After freeze thawing, the cell lysates were collected onto glass bre lters, immersed in scintillation uid and the radioactivity counted using a 96-well plate scintillation counter. The data were tted to sigmoidal curves using SigmaPlot software to estimate IC50 values.
In vivo antimalarial assay. In vivo activity of oxythiamine was determined using methodology described previously56. Balb/c mice (females, 1821 g, 8 weeks old) were obtained from the Animal Resources Centre, Canning Vale, Western Australia. Approval for the study was obtained from the Animal Ethics Committee, The Australian National University (protocol number F.BMB.31.07). Blood was collected from a donor mouse, diluted with saline to 5 107 P. vinckei vinckei
parasitized erythrocytes per ml and 200 ml injected intraperitoneally to infect each mouse to be used in the experiment. Two hours following infection, the animals were randomly selected and divided into two groups of seven or eight mice each and were orally administered by gavage with 400 mg kg 1 per day of oxythiamine or an equivalent volume of distilled water (negative control group). The drug was given once daily for 3 consecutive days (day 0day 2). A small drop of tail blood was taken from each mouse on day 5 post infection/start of drug treatment for preparation of methanol-xed and Giemsa-stained smears. The parasitemia was determined for each mouse by counting the number of parasitized erythrocytes in random elds of more than 1,000 erythrocytes. The parasitemia of each mouse was monitored daily, and mice with parasitemia 425% were euthanized. Parasite growth inhibition was determined by comparing the parasitemia of mice receiving the test compounds with those in the negative control group. Changes in the physical activity and body weight of mice were also monitored daily from the start of drug treatment for signs of toxicity, and the mean survival time for each group was evaluated.
References
1. Divo, A. A., Geary, T. G., Davis, N. L. & Jensen, J. B. Nutritional requirements of Plasmodium falciparum in culture. I. Exogenously supplied dialyzable components necessary for continuous growth. J. Protozool. 32, 5964 (1985).
2. Saliba, K. J. & Kirk, K. Nutrient acquisition by intracellular apicomplexan parasites: staying in for dinner. Int. J. Parasitol. 31, 13211330 (2001).
3. Bozdech, Z. & Ginsburg, H. Data mining of the transcriptome of Plasmodium falciparum: the pentose phosphate pathway and ancillary processes. Malar. J. 4, 17 (2005).
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4. Ralph, S. A. et al. Tropical infectious diseases: metabolic maps and functions of the Plasmodium falciparum apicoplast. Nat. Rev. Microbiol. 2, 203216 (2004).
5. Wrenger, C. et al. Vitamin B1 de novo synthesis in the human malaria parasite Plasmodium falciparum depends on external provision of 4-amino-5-hydroxymethyl-2-methylpyrimidine. Biol. Chem. 387, 4151 (2006).
6. Wrenger, C., Knockel, J., Walter, R. D. & Muller, I. B. Vitamin B1 and B6 in the malaria parasite: requisite or dispensable? Braz. J. Med. Biol. Res. 41, 8288 (2008).
7. Muller, I. B., Hyde, J. E. & Wrenger, C. Vitamin B metabolism in Plasmodium falciparum as a source of drug targets. Trends. Parasitol. 26, 3543 (2010).
8. Eschbach, M. L., Muller, I. B., Gilberger, T. W., Walter, R. D. & Wrenger, C. The human malaria parasite Plasmodium falciparum expresses an atypical N-terminally extended pyrophosphokinase with specicity for thiamine. Biol. Chem. 387, 15831591 (2006).
9. Friedrich, W. Vitamins (W. de Gruyter, 1988).10. Lonsdale, D. Thiamine. J. Orthomol. Med. 13, 197209 (1984).11. Pohl, M., Sprenger, G. A. & Muller, M. A new perspective on thiamine catalysis. Curr. Opin. Biotechnol. 15, 335342 (2004).
12. Foth, B. J. et al. The malaria parasite Plasmodium falciparum has only one pyruvate dehydrogenase complex, which is located in the apicoplast. Mol. Microbiol. 55, 3953 (2005).
13. McMillan, P. J., Stimmler, L. M., Foth, B. J., McFadden, G. I. & Muller, S. The human malaria parasite Plasmodium falciparum possesses two distinct dihydrolipoamide dehydrogenases. Mol. Microbiol. 55, 2738 (2005).
14. Joshi, S. et al. Molecular cloning and characterization of Plasmodium falciparum transketolase. Mol. Biochem. Parasitol. 160, 3241 (2008).
15. Pei, Y. et al. Plasmodium pyruvate dehydrogenase activity is only essential for the parasites progression from liver infection to blood infection. Mol. Microbiol. 75, 957971 (2010).
16. Weber, W. & Kewitz, H. Determination of thiamine in human plasma and its pharmacokinetics. Eur. J. Clin. Pharmacol. 28, 213219 (1985).
17. Knockel, J. et al. The antioxidative effect of de novo generated vitamin B6 in Plasmodium falciparum validated by protein interference. Biochem.J. 443, 397405 (2012).18. Rug, M., Wickham, M. E., Foley, M., Cowman, A. F. & Tilley, L. Correct promoter control is needed for trafcking of the ring-infected erythrocyte surface antigen to the host cytosol in transfected malaria parasites. Infect. Immun. 72, 60956105 (2004).
19. Geary, T. G., Divo, A. A. & Jensen, J. B. Nutritional requirements of Plasmodium falciparum in culture. II. Effects of antimetabolites in a semi-dened medium. J. Protozool. 32, 6569 (1985).
20. Vogl, C., Klein, C. M., Batke, A. F., Schweingruber, M. E. & Stolz, J. Characterization of Thi9, a novel thiamine (vitamin B1) transporter from
Schizosaccharomyces pombe. J Biol. Chem. 283, 73797389 (2008).21. Tylicki, A. et al. Modication of thiamine pyrophosphate dependent enzyme activity by oxythiamine in Saccharomyces cerevisiae cells. Can. J. Microbiol. 51, 833839 (2005).
22. Thomas, A. A. et al. Synthesis, in vitro and in vivo activity of thiamine antagonist transketolase inhibitors. Bioorg. Med. Chem. Lett. 18, 22062210 (2008).
23. Boros, L. G. et al. Oxythiamine and dehydroepiandrosterone inhibit the nonoxidative synthesis of ribose and tumor cell proliferation. Cancer. Res. 57, 42424248 (1997).
24. Rais, B. et al. Oxythiamine and dehydroepiandrosterone induce a G1 phase cycle arrest in Ehrlichs tumor cells through inhibition of the pentose cycle. FEBS Lett. 456, 113118 (1999).
25. Yang, C. M., Liu, Y. Z., Liao, J. W. & Hu, M. L. The in vitro and in vivo anti-metastatic efcacy of oxythiamine and the possible mechanisms of action. Clin. Exp. Metastasis 27, 341349 (2010).
26. Smithline, H. A., Donnino, M. & Greenblatt, D. J. Pharmacokinetics of high-dose oral thiamine hydrochloride in healthy subjects. BMC. Clin. Pharmacol. 12, 4 (2012).
27. Krishna, S. et al. Thiamine deciency and malaria in adults from southeast Asia. Lancet 353, 546549 (1999).
28. Mayxay, M. et al. Thiamin deciency and uncomplicated falciparum malaria in Laos. Trop. Med. Int. Health. 12, 363369 (2007).
29. Muller, I. B. et al. Poisoning pyridoxal 5-phosphate-dependent enzymes: a new strategy to target the malaria parasite Plasmodium falciparum. PLoS One 4, e4406 (2009).
30. Gardiner, D. L., Trenholme, K. R., Skinner-Adams, T. S., Stack, C. M. & Dalton,J. P. Overexpression of leucyl aminopeptidase in Plasmodium falciparum parasites. Target for the antimalarial activity of bestatin. J. Biol. Chem. 281, 17411745 (2006).31. Slavic, K. et al. Life cycle studies of the hexose transporter of Plasmodium species and genetic validation of their essentiality. Mol. Microbiol. 75, 14021413 (2010).
32. Joshi, S. et al. Identication of potential P. falciparum transketolase inhibitors: pharmacophore design, in silico screening and docking studies. J. Biophys. Chem. 1, 96104 (2010).
33. Yeh, E. & DeRisi, J. L. Chemical rescue of malaria parasites lacking an apicoplast denes organelle function in blood-stage Plasmodium falciparum. PLoS Biol. 9, e1001138 (2011).
34. Rao, A., Yeleswarapu, S. J., Srinivasan, R. & Bulusu, G. Localization of haem biosynthesis pathway enzymes in Plasmodium falciparum. Indian. J. Biochem. Biophys. 45, 365373 (2008).
35. Hopkins, J. et al. The plastid in Plasmodium falciparum asexual blood stages: a three-dimensional ultrastructural analysis. Protist 150, 283295 (1999).
36. Sato, S., Clough, B., Coates, L. & Wilson, R. J. Enzymes for haem biosynthesis are found in both the mitochondrion and plastid of the malaria parasite Plasmodium falciparum. Protist 155, 117125 (2004).
37. van Dooren, G. G. et al. Development of the endoplasmic reticulum, mitochondrion and apicoplast during the asexual life cycle of Plasmodium falciparum. Mol. Microbiol. 57, 405419 (2005).
38. van Dooren, G. G., Stimmler, L. M. & McFadden, G. I. Metabolic maps and functions of the Plasmodium mitochondrion. FEMS. Microbiol. Rev. 30, 596630 (2006).39. Mather, M. W., Henry, K. W. & Vaidya, A. B. Mitochondrial drug targets in apicomplexan parasites. Curr. Drug. Targets 8, 4960 (2007).
40. Painter, H. J., Morrisey, J. M. & Vaidya, A. B. Mitochondrial electron transport inhibition and viability of intraerythrocytic Plasmodium falciparum. Antimicrob. Agents. Chemother. 54, 52815287 (2010).
41. Pradel, G. & Schlitzer, M. Antibiotics in malaria therapy and their effect on the parasite apicoplast. Curr. Mol. Med. 10, 335349 (2010).
42. Vaidya, A. B. Mitochondrial and plastid functions as antimalarial drug targets. Curr. Drug. Targets. Infect. Disord. 4, 1123 (2004).
43. Trager, W. & Jensen, J. B. Human malaria parasites in continuous culture. Science 193, 673675 (1976).
44. Allen, R. J. & Kirk, K. Plasmodium falciparum culture: the benets of shaking. Mol. Biochem. Parasitol. 169, 6365 (2010).
45. Das Gupta, R. et al. 3-Aminooxy-1-aminopropane and derivatives have an antiproliferative effect on cultured Plasmodium falciparum by decreasing intracellular polyamine concentrations. Antimicrob. Agents. Chemother. 49, 28572864 (2005).
46. Muller, I. B. et al. The assembly of the plasmodial PLP synthase complex follows a dened course. PLoS One 3, e1815 (2008).
47. Crabb, B. S. et al. Transfection of the human malaria parasite Plasmodium falciparum. Methods. Mol. Biol. 270, 263276 (2004).
48. Muller, I. B. et al. Secretion of an acid phosphatase provides a possible mechanism to acquire host nutrients by Plasmodium falciparum. Cell. Microbiol. 12, 677691 (2010).
49. Biller, L. et al. Comparison of two genetically related Entamoeba histolytica cell lines derived from the same isolate with different pathogenic properties. Proteomics 9, 41074120 (2009).
50. Rozen, S. & Skaletsky, H. Primer3 on the WWW for general users and for biologist programmers. Methods. Mol. Biol. 132, 365386 (2000).
51. Salanti, A. et al. Selective upregulation of a single distinctly structuredvar gene in chondroitin sulphate A-adhering Plasmodium falciparum involved in pregnancy-associated malaria. Mol. Microbiol. 49, 179191 (2003).
52. Livak, K. J. & Schmittgen, T. D. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25, 402408 (2001).
53. Butzloff, S., Groves, M. R., Wrenger, C. & Muller, I. B. Cytometric quantication of singlet oxygen in the human malaria parasite Plasmodium falciparum. Cytometry. A 81, 698703 (2012).
54. Muller, I. B. et al. The vitamin B1 metabolism of Staphylococcus aureus is controlled at enzymatic and transcriptional levels. PLoS One 4, e7656 (2009).
55. Fang, R., Nixon, P. F. & Duggleby, R. G. Identication of the catalytic glutamate in the E1 component of human pyruvate dehydrogenase. FEBS Lett. 437, 273277 (1998).
56. Saliba, K. J., Ferru, I. & Kirk, K. Provitamin B5 (pantothenol) inhibits growth of the intraerythrocytic malaria parasite. Antimicrob. Agents Chemother. 49, 632637 (2005).
57. van Schalkwyk, D. A., Priebe, W. & Saliba, K. J. The inhibitory effect of 2-halo derivatives of D-glucose on glycolysis and on the proliferation of the human malaria parasite Plasmodium falciparum. J. Pharmacol. Exp. Ther. 327, 511517 (2008).
Acknowledgements
We are grateful to Go8/DAAD (D/08/13996) for a Research Cooperation Scheme grant and the Deutsche Forschungsgemeinschaft (WR124/2) for funding support that enabled this study. We are also grateful to Dr Berin Boughton (Metabolomics Australia) for carrying out the MS analysis and to the Canberra branch of the Australian Red Cross Blood Service for providing blood. C.W. is a Jovem Pesquisador of the Fundaao de Amparo Pesquisa do Estado de Sao Paulo (2009/54325-2) and is supported by the Conselho Nacional de Desenvolvimento Cientco e Tecnolgico (302108/2012-2).
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Author contributions
X.W.A.C., C.W., I.B.M. and K.J.S. designed the research. X.W.A.C., C.W., K.S., B.B., M.W. and I.B.M. performed the research. X.W.A.C., C.W., K.S., B.B., M.W., I.B.M. and K.J.S. Analysed data. X.W.A.C., C.W., I.B.M. and K.J.S. interpreted data. X.W.A.C., C.W.,I.B.M. and K.J.S. wrote the paper.
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How to cite this article: Chan X. W. A. et al. Chemical and genetic validation of thiamine utilization as an antimalarial drug target. Nat. Commun. 4:2060doi: 10.1038/ncomms3060 (2013).
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Copyright Nature Publishing Group Jun 2013
Abstract
Thiamine is metabolized into an essential cofactor for several enzymes. Here we show that oxythiamine, a thiamine analog, inhibits proliferation of the malaria parasite Plasmodium falciparum in vitro via a thiamine-related pathway and significantly reduces parasite growth in a mouse malaria model. Overexpression of thiamine pyrophosphokinase (the enzyme that converts thiamine into its active form, thiamine pyrophosphate) hypersensitizes parasites to oxythiamine by up to 1,700-fold, consistent with oxythiamine being a substrate for thiamine pyrophosphokinase and its conversion into an antimetabolite. We show that parasites overexpressing the thiamine pyrophosphate-dependent enzymes oxoglutarate dehydrogenase and pyruvate dehydrogenase are up to 15-fold more resistant to oxythiamine, consistent with the antimetabolite inactivating thiamine pyrophosphate-dependent enzymes. Our studies therefore validate thiamine utilization as an antimalarial drug target and demonstrate that a single antimalarial can simultaneously target several enzymes located within distinct organelles.
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